Scaffold Ga0211677

Basic Information
Taxon OID	3300020385 Open in IMG/M
Scaffold ID	Ga0211677_10001747 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001059 (ERX556045-ERR598965)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020385 Open in IMG/M

Scaffold ID

Ga0211677_10001747 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_B100001059 (ERX556045-ERR598965)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	16450
Total Scaffold Genes	36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	31 (86.11%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

16450

Total Scaffold Genes

36 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

31 (86.11%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_093
Coordinates	Lat. (^o)	-33.832	Long. (^o)	-73.0366	Alt. (m)	Depth (m)	35
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_093

Coordinates

Lat. (^o)

-33.832

Long. (^o)

-73.0366

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002593	Metagenome / Metatranscriptome	545	Y
F006589	Metagenome / Metatranscriptome	369	Y
F018089	Metagenome	237	Y
F022888	Metagenome / Metatranscriptome	212	N
F046689	Metagenome / Metatranscriptome	151	N
F099426	Metagenome	103	N
F099884	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211677_1000174710	F018089	GGAG	MSNQTTFEVKNPKATATYGQIQRIAMHFSKAKNCPKDIKFGTVRGHFLAKLNDTKSPLTQGQVSKILSLKSLPKADLTAMRAYKKLVNLG
Ga0211677_1000174712	F099884	GGA	MMASTKITLTLWRCKLEILIDKISETRQERLLNPQMSDHYRTWFQGKYGMKIYDIKVGRKWVFIRSKSHRARLPLAKFKTQAFVQWHCDARTHASSETYAETGRYKKSRGWWKNYGFESNPADVNYNRGDLIWK
Ga0211677_1000174716	F046689	GAGG	MKQGHLINKINKLIPVANATPMSEFYDDDSIGIWIRGSEYSYKDRLLFEYYDFENQVHPELLKIIEDAGWYGEPYDAGTLMLYPY
Ga0211677_1000174717	F002593	GGAG	MSKLIYSRNGSETTESINDASPMIKSIWYQAHSFGANIVRVRAEKNRFGTDTGRTFNSFHHGKVSIYKQKDTVHPNNSLYFARKIPLTKVNKGMQILEIASSLDVQDTLDTVDAIQYYSETSFFERLWNRIRYGTPMSITS
Ga0211677_1000174718	F099426	GGAG	MPRRKTTRRPLPLFEIITAKKAPPRKTTPKSFWRDLVGGMTAGDWFILDECDKDRVGAGISKFARGRYSLYQHPELEGKYVFTITK
Ga0211677_100017472	F006589	N/A	MLKELLEKKVNSMINTNDLTDMQVWGVMCGIGVILTLIIIWII
Ga0211677_1000174730	F022888	AGGAGG	MNYIYERMMADGETAIFDKSELRKFEDYVAENYTEFYESKAGYEIEKQGEEFLVTLFKNPVITMEDILLDIRD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211677_10001747

Overview

Ecosystem & Geography

Associated Families

Sequences