Scaffold Ga0211677_10001602

Overview

Basic Information

• Taxon OID: 3300020385
• Scaffold ID: Ga0211677_10001602
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001059 (ERX556045-ERR598965)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17583
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (81.82%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_093
• Coordinates
  • Lat. (^o): -33.832
  • Long. (^o): -73.0366
  • Depth (m): 35

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013531	Metagenome / Metatranscriptome	270	Y
F050758	Metagenome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211677_100016026	F050758	N/A	MITDQEKAIYYLTKAKILVEEVSESNGDDDHILPLGANRVLVDVVDALKEEIDRASDYEEYDPG
Ga0211677_100016028	F013531	AGGAGG	MVDKKKEQPLLSFQDKDGNPREIFEKDLTDLNRPLIQQISQDLGAQQQLEEAFQLATKTVHHMESVRRNIANTIEKLEDVLPPYKKPIVIEGADKGGK