Scaffold Ga0211677_10001258

Overview

Basic Information

• Taxon OID: 3300020385
• Scaffold ID: Ga0211677_10001258
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001059 (ERX556045-ERR598965)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20848
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (60.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_093
• Coordinates
  • Lat. (^o): -33.832
  • Long. (^o): -73.0366
  • Depth (m): 35

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047767	Metagenome / Metatranscriptome	149	N
F056968	Metagenome	137	N
F071407	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211677_1000125815	F071407	AGGAGG	MAIELKKVRNAETLALGFNHEAEIDLSTLGTTAGSATAVDIQVGEAAMAGGVYAAAIIVDELVVGTSITDATIAIGDDGDADGFVDEVDVFNDSGNLGKIFTNTGALLDDGLHLVSAVDLTYNFTGEGPDVATAGKIRLLMDYHPTAGELYGA
Ga0211677_1000125820	F047767	N/A	MNQLVTNLYPRPNSTIAGENLSCATSGSGVSFAAFDDDTKYVMIDVQDNNVIVTFDGSAPTASNGHLLLKEKGLITLSFQAAKAAKFLGVSGAAIVHGSQFV
Ga0211677_100012587	F056968	AGGA	MNKNMQLVEKSLDTIVPEWETVMVASITDNGFEYDIFNKVDSEHFQENLAVLLALVAKKSQQELQNIDWIDD