Scaffold Ga0211677_10001206

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211677_10001206

Scaffold Ga0211677_10001206

Overview

Basic Information
Taxon OID	3300020385 Open in IMG/M
Scaffold ID	Ga0211677_10001206 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001059 (ERX556045-ERR598965)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	21272
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (73.68%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_093
Coordinates	Lat. (^o)	-33.832	Long. (^o)	-73.0366	Alt. (m)		Depth (m)	35
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005416	Metagenome / Metatranscriptome	401	Y
F075335	Metagenome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211677_1000120616	F075335	N/A	MTIIKEDNRIGPAVCCKCGDDAKINHGGKWYCSIESDMGVMNLKGFCIKERKGKLESNND
Ga0211677_100012062	F005416	GAG	VEWVFPFDGMQIGDSFFVPTLKTSHMIYAIESGAKRAKVKVKTYATSKDNHLGVRAWRIG

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