Scaffold Ga0211677

Basic Information
Taxon OID	3300020385 Open in IMG/M
Scaffold ID	Ga0211677_10000603 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100001059 (ERX556045-ERR598965)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020385 Open in IMG/M

Scaffold ID

Ga0211677_10000603 Open in IMG/M

Source Dataset Name

Marine microbial communities from Tara Oceans - TARA_B100001059 (ERX556045-ERR598965)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	32615
Total Scaffold Genes	45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	28 (62.22%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

32615

Total Scaffold Genes

45 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

28 (62.22%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (71.43%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	TARA_093
Coordinates	Lat. (^o)	-33.832	Long. (^o)	-73.0366	Alt. (m)	Depth (m)	35
Location on Map

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Source Dataset Sampling Location

Location Name

TARA_093

Coordinates

Lat. (^o)

-33.832

Long. (^o)

-73.0366

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001582	Metagenome / Metatranscriptome	668	Y
F002716	Metagenome / Metatranscriptome	535	Y
F004956	Metagenome / Metatranscriptome	417	Y
F008346	Metagenome	335	Y
F008595	Metagenome / Metatranscriptome	331	Y
F028655	Metagenome / Metatranscriptome	191	N
F101490	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211677_1000060314	F028655	N/A	MKIIDKAKAHFDSLEIKEIEIPEWSEGDEVLKVYAKPLTLAEMSKLQRYAKDDDVALMAYCLIYKALDSDGEKVFDLSDKHTLMNGVDKDVLARVATEIMSSPSVEEQAKK
Ga0211677_1000060316	F004956	AGGAG	MKMISPNGNISIDAHPSKVESYLNMGWKEEAAQTIKSSSKKTKNEVKENGDT
Ga0211677_1000060318	F002716	GAGG	MSEYRLETEEDMSAYLDIEYGHGVSAVYTNSSSTASTINVILNNEYVEQEEGIGVEALKPIAYCRTVDVPSIAFGNTLNVSAIKDVDGNILKAAQNYTVVNIQSDRTGFSALMLEKI
Ga0211677_1000060319	F001582	AGAAG	MPLESAADFNSYVDINTGHGVTATFFEVQNSLWDQRLGLIDTWFDIDSGNSTNINIIIDQEYFNIEGGTVPVAGYQPRAIVKSSDVPYISQQDRLVVNAITTNKGSVLKPETTFFVRTVEPDNTGLVSLVLEEQ
Ga0211677_1000060330	F008346	AGGAG	MPIKLKASQKIRDRATGKTTTEHYYLKSMTIKDLNDYIESSTAKKKVIQKCRNELTRRSKCNLI
Ga0211677_1000060332	F101490	N/A	MIPMKNYLQETIEKQLKDFRSYETSIEREWGGKKRLFKCVDAQLEIKFCKAQMLFDESLIESPVKKKIEMIEMMYRAYSALVDKAADNGYSKLEDDFRCYKYRDNKIAIVCDTDTQIPRLKELHGTDKDVVLFSVEELFRFMHPDYLSAKETFKKKNLDIMFKRVSFT
Ga0211677_100006035	F008595	GAGG	MENTETIKPEDQVIITFNEKEYRASDLNEDQMAIAAKLNVVGRKLSRLQEAYDDYVITSEYKNLCIQSFDRAINAEEEEVEEK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0211677_10000603

Overview

Ecosystem & Geography

Associated Families

Sequences