Scaffold Ga0211677_10000364

Overview

Basic Information

• Taxon OID: 3300020385
• Scaffold ID: Ga0211677_10000364
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001059 (ERX556045-ERR598965)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 41958
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 30 (55.56%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_093
• Coordinates
  • Lat. (^o): -33.832
  • Long. (^o): -73.0366
  • Depth (m): 35

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005364	Metagenome / Metatranscriptome	403	Y
F007609	Metagenome / Metatranscriptome	348	Y
F027997	Metagenome	193	Y
F057678	Metagenome / Metatranscriptome	136	N
F061281	Metagenome / Metatranscriptome	132	N
F083272	Metagenome / Metatranscriptome	113	N
F089408	Metagenome / Metatranscriptome	109	N
F105900	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211677_1000036412	F089408	GAG	MYNMLRRKYQQEKPDLIQDVVSKGKLTAILSIKLQGVSKIADHYIYEVRFLDNGIEKNIPIIAFDVTQALAKLEPHLNIGIPSATLKWMLGNERNVKGSNINL
Ga0211677_1000036413	F007609	N/A	MITLENISTGEVFAGDELEFFVDDDTLIGEVFLDGDLIFQSLDVLDDDQLEHALKLEFKMVEEEEDIFSNFGH
Ga0211677_1000036416	F005364	GGA	MKKSDLKNKLKSLVKEEVSSLLAERDYKYGGLLDPTDFDPVDPEVHIIGFGSMTRSALRQEIVRRLQGALKTAKDAATGGSNSYDKFKSLEGVLEPNGVLQQQLKAEREISQQMEELRSQGGRRAIPIPKQK
Ga0211677_1000036420	F057678	N/A	MVEYEVNDKVVFRFNNVNEVAVITNVRRHKKTITGYDIRSEKGSGYVIVQVDANLTTRQRNKRVEYPLIDSKLTAAWIGSDSETNLFAKENVGHTRQNFSKDMTLVLDGEGSGCVQHFERHNDLIFPTQGPRSF
Ga0211677_1000036421	F061281	N/A	MNKFQKKVLKQFPNAYVESSATGLRIINNDRYLAKEFYMPDTTCEDTAWEYAALACKMAQNFNRAHPSRMDLSDVENKLARINRRKRNGRRVK
Ga0211677_1000036423	F105900	N/A	MGRVNNAFAYDKKRSQRMGKLYSTIDFNVNDKISADLFKAVPEKPIVGELEIGGKSFKVTYQEIDAMMTTLQEAKRTVESKYRLGLMNK
Ga0211677_1000036430	F027997	AGG	MKDRENVLRILDETDNMVMIIDQAVKNGNPIDPLEARNRFRTIRQKLKFVTDRVTAS
Ga0211677_100003644	F083272	AGG	MKKSDIHKIIREEFVNILREETLITEAFQDPIARMLAKDRSLGNSWFNFFNAMSKSFDIAWDKVPKGAFQKVTPGSPLAKKGLAIYYIKGDVENPFAGTDRYGYSRDAKIYGPAVLAATINNKITYQSGRGDDATVGGKSRRSEPVGKAIRGTMQVNKLKDIADMVYVFDLESYRGGTTALKSARAQLKLGKDKFTDHKAWKKANLSRYEDILRSRVGGRDQVDRMVADIVKIANQAVTDAVSGALKQDRYGDIMTTVSGQEVMLKDVTQSMSNALEDYRRYIQYENDEDGAAKADSYSGQYYSAKKKEYAMELKRYLKGFKTGKIKRY