Scaffold Ga0211677_10000139

Overview

Basic Information

• Taxon OID: 3300020385
• Scaffold ID: Ga0211677_10000139
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001059 (ERX556045-ERR598965)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 65350
• Total Scaffold Genes: 82
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (18.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_093
• Coordinates
  • Lat. (^o): -33.832
  • Long. (^o): -73.0366
  • Depth (m): 35

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022632	Metagenome / Metatranscriptome	213	N
F051866	Metagenome / Metatranscriptome	143	N
F055657	Metagenome / Metatranscriptome	138	N
F085543	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211677_1000013929	F055657	N/A	MEKIYKEDMHDVTPEEAKTWILEYYNSKITTDYMGTNTCDYIFESVYTADSYTVYWAHANDDYGFNPENVYYYATGMVEDIIGCVKDGLDIFIDEEIYDELYIDDLLHEQYIIVQDKIEAEKELNDTD
Ga0211677_1000013957	F051866	N/A	MKELKNQIIATVGLIITAAGGIFIANMEAIFSPEDDSPPPTMEQTITIPPSVVKDTLVITKTVIQKPKKEEREIDW
Ga0211677_1000013958	F022632	N/A	MKKLFILFLFISCTTEVYNERPIQEVPESLFMPQAVGLKLESYIVQDKVRINTKLPSDGDYRIKILDFTNTIINQEIIKGREGDNILNIYVNSLPVSSYTVELYTKNNQFIGRQTFSMK
Ga0211677_1000013960	F085543	N/A	MKYIKGIKIVSSLLFCIVISAQDIKINDIKNSIQTGPLVGNRNVGFGLKNILEEVVQDQDYSLNDRSKNVLDVELIYFDVKRTQSNIALYSKSSSQTEIIAIAKYKKKKVKVKGTSKDITTSLILLNEQGKFTQNSVSVALKKLSENIIKKLKL