Scaffold Ga0211677_10000043

Overview

Basic Information

• Taxon OID: 3300020385
• Scaffold ID: Ga0211677_10000043
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100001059 (ERX556045-ERR598965)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 127430
• Total Scaffold Genes: 141
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 96 (68.09%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_093
• Coordinates
  • Lat. (^o): -33.832
  • Long. (^o): -73.0366
  • Depth (m): 35

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008051	Metagenome	340	Y
F015262	Metagenome / Metatranscriptome	256	Y
F016207	Metagenome	249	Y
F037985	Metagenome	167	N
F042011	Metagenome	159	Y
F043079	Metagenome	157	N
F061354	Metagenome	132	Y
F067118	Metagenome / Metatranscriptome	126	Y
F079232	Metagenome	116	N
F083239	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211677_100000431	F042011	GAG	MRKQQYETSARIAMIALIAMVVSLTISIAIGKSSIPEEAIPPTAMHEYAYEWTPTPLEQRKMDSLYRIDAVTKADMDSIKDLIDAILIKLD
Ga0211677_10000043134	F067118	GGAG	MALEDLQSQYGPYNKKGSKGTGEVFDTLANEGTSGLEDGRSKYASKSKNGTKPSGPDVFGNIPAERSYE
Ga0211677_10000043136	F015262	AGGA	MILNRTWQQFVKAKENQNLTLQEQKRKYADERKRYEQHVAFINSGLYNKG
Ga0211677_1000004315	F079232	GAG	MLKAKNQKPKTFIYGIEITKPWSKEMYDHNERTEEHLKDQILAAFQKTYANMAIPMDEDGLRDMAHEIAGYRYGEGFSIDDIKEETIKAIVNMPGFQLHESMYYLHHKGYVKTQAMGLIGYQPDPHLVPYWEVK
Ga0211677_1000004322	F043079	AGAAG	MKNVLNYKGSSMSWKIVSKITDTYDFQDGAQNSYIVYVQDDAGVNIAAKEAYGIADRTKVTKELINEYQEYGIVKIEHQEH
Ga0211677_1000004323	F083239	GGA	MTENYLDLTIDEVYDVITSINIWPQTFDTSKKIAFMNHMITYFEKKEEYEKCAKLQRLIHVMEDSE
Ga0211677_100000434	F037985	GAGG	MEKITTASKSQLRLRFIACIYPIAYVLIWPLVYGILPAYSNYYVFGGIYFTLATSMMAWAMWLHRDIKWSVPAYALVGVALFDCVDYWMLHNILAIIFFLSSTYLMRTDKRFDWLGDISVTWYILLVIPGGVFWFEAIQAVLISVFHLSYVRRLWRVRRL
Ga0211677_1000004343	F016207	N/A	MRYYILYPGNTEADTINDINQLGDDNGFGVFWANRGLNVLMNAVDQQHSITEELVIKCERGKSYSIEEFLDKIKSLKVRVQE
Ga0211677_100000435	F061354	AGGAG	MKVMVWVTQTNVELLERGEIIQYWLREPANALDVVQIQISYDNFIRLRDNQPEHYVTRDHMRFINYSGMQDDNYYTSDTPKSYDEGYGVED
Ga0211677_1000004364	F008051	N/A	MIEILGWISTALVLIGFGLNAKGKFHYAMITWIVGDIGWITYDFYITNFSHLVLSLVIIAINVYGIINLKKQ