Scaffold Ga0211646_10145325

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211646_10145325

Scaffold Ga0211646_10145325

Overview

Basic Information
Taxon OID	3300020383 Open in IMG/M
Scaffold ID	Ga0211646_10145325 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000929 (ERX556043-ERR598971)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	855
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_109
Coordinates	Lat. (^o)	2.1008	Long. (^o)	-84.5107	Alt. (m)		Depth (m)	380
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F076483	Metagenome	118	Y
F084713	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211646_101453251	F084713	N/A	MPKLIIEKIHDKKTYGKDMYKVVKLIDSHRLSLLETQFDEPSMLRYIQALPNTYRYEIQNKTGV
Ga0211646_101453253	F076483	AGGAG	MQMIKTNTLSQIFKEHNIEVDRISKIRTLQTFLNDTTLDIPLMRRLVTMENLRWILRNVLVNNAEHVNVNRIIKLTKEVI

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