Scaffold Ga0211646_10005043

Overview

Basic Information

• Taxon OID: 3300020383
• Scaffold ID: Ga0211646_10005043
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000929 (ERX556043-ERR598971)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6076
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_109
• Coordinates
  • Lat. (^o): 2.1008
  • Long. (^o): -84.5107
  • Depth (m): 380

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000615	Metagenome / Metatranscriptome	984	Y
F016675	Metagenome / Metatranscriptome	245	Y
F055786	Metagenome	138	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211646_1000504314	F016675	N/A	MRNFEVDYETTVPPWHTGHEKYEAEDLDTAKEMFRSKHEAARIYKLTEVLYDQRFAV
Ga0211646_100050432	F055786	N/A	MICSYCYKSQIAVKHDVGHWWNNPLDSVYVCSDKCYTELEKLVKDRTWMDYKPPRIFGKKKTIGAITDKQFTENLTN
Ga0211646_100050439	F000615	N/A	VSGSERPENIMCRIRLFYECSDGSMGFAEHLMPYSEDIAGFIKHWKTGGRMVITEYFDLV