Scaffold Ga0211646_10000360

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211646_10000360

Scaffold Ga0211646_10000360

Overview

Basic Information
Taxon OID	3300020383 Open in IMG/M
Scaffold ID	Ga0211646_10000360 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000929 (ERX556043-ERR598971)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	26731
Total Scaffold Genes	30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	22 (73.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_109
Coordinates	Lat. (^o)	2.1008	Long. (^o)	-84.5107	Alt. (m)		Depth (m)	380
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F014667	Metagenome / Metatranscriptome	261	Y
F022752	Metagenome / Metatranscriptome	213	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211646_1000036011	F014667	GAGG	MQKVSQLVQNNQTFNSNSYKNLSPVMKEAVSDVMKLVDKGTQDIMNTFEVAVTKVAEQRNIDKDDIEEFFDVELKEQLEE
Ga0211646_1000036027	F022752	N/A	MATLSNLLGGGSAGAIDHRKEGLPLFGLWGDDGGGNSNVTYRVFDSGYKMVGSPWGAVCNSTTNYRFGMLGDATHAYSQSDHGTDVSHADLTSQQYDSWTNWLKSLYQCDQYPHAQYYTSSRDGYSSFHSYHHASSMFEFQVGWTKINMVLPEGCRPRRMFCNRRRSLREQNVGNSSCANIDHYLYTSHLLDTTNTYASGTGYNEKNKMLVMVHSADEGSNTAKTIHVFKSSKDLNQCNRIKDYFDNLTATEYFTGTWTTDCNKDMTVVVGNNGWVGFGHKNGNSMRYAAFNCNTGLGLGTTDAARIFDSWQDFSGSTTTSYGANQGAQYYTKFNHTWDGTWGMIYAPYYYYGPGLNAFCMSIENPRKFISVNETKSSRSNPWFAWGRTGFHGGWSDNTDGDTWRTYSWSFDPTDSDHTTTTKVYRGATSGNGIITDDDSHLGDEAITNKTGNVGLGANRTFLHGGYHSTCYPLMMQIDWWGNYGNTDGNYGGNGYNTTD

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