Scaffold Ga0211686_10346811

Overview

Basic Information

• Taxon OID: 3300020382
• Scaffold ID: Ga0211686_10346811
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000780 (ERX556058-ERR599059)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 605
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_084
• Coordinates
  • Lat. (^o): -60.3606
  • Long. (^o): -60.5096
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F071643	Metagenome	122	Y
F087751	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211686_103468111	F071643	N/A	TVPPHPETFKLRCLVIRPEHDHMYWSSKASNYNTHAERVAFLKKNGITSDQRIDTILHLAVSFLPSRMYRLPNKLITTAWKDLPSDTARTMFAIGIKNLKKKNRV
Ga0211686_103468112	F087751	GAG	MSIFKKKDDVLLQTNKMTADEIIETYARLNLYQKAALLRLLVRDVIFHVADDEVSGLNFTDINVDGAIIVAKQE