NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211686_10081164

Scaffold Ga0211686_10081164


Overview

Basic Information
Taxon OID3300020382 Open in IMG/M
Scaffold IDGa0211686_10081164 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000780 (ERX556058-ERR599059)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1320
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_084
CoordinatesLat. (o)-60.3606Long. (o)-60.5096Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038423Metagenome166Y
F040181Metagenome162N
F076503Metagenome118N

Sequences

Protein IDFamilyRBSSequence
Ga0211686_100811641F076503N/AYGELCDNSNFEVVCEDEDNDAVWVNGNPHSEDFTFKTWDEVKIELSKYFEDIVEISAV
Ga0211686_100811642F040181AGGAGMGFDWMGNDGDVYRSLKGIANKGGYFGSVNQANFWMRCAQESGVHAGPCFSWGDSVELEPGEFFFFCEGSISANYATQAGVQRGWGRKTRYKTWGFVVDAAGVNLIYQLYRSYNDKDGGSGPNAARTEVIWRRDNEQVEATIAGFEALRAEREAKIAEAKAQSKYVGEIGERIDIEGVARLVSSRPGRWGTTNLYIIKTTDGNTLKYSGSNHYGEKVKITGRFTVKQHTEYNGELQTVINRPHKVESEILDDGT
Ga0211686_100811643F038423GAGMTEHDNFIFNLERKQIRVKTAISNYKKQWLSGTASQPLKKQQKQDSGSTLKAKLLAKK
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