Scaffold Ga0211686_10046636

Overview

Basic Information

• Taxon OID: 3300020382
• Scaffold ID: Ga0211686_10046636
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000780 (ERX556058-ERR599059)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1750
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_084
• Coordinates
  • Lat. (^o): -60.3606
  • Long. (^o): -60.5096
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000302	Metagenome / Metatranscriptome	1337	Y
F014790	Metagenome / Metatranscriptome	260	Y
F069051	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211686_100466361	F014790	N/A	MQKQIENKIQEFAKLTGLTERVTMSHGTLYALLLQPERCDFFHGVVRTFYKDNINPEGGVDMHPVGDEFAFDFVEGDKDNYHAEGGVWSEFAEEELLNNIDEEDESPAFPSYNEMPDEVDTILNLEAEAREG
Ga0211686_100466362	F069051	N/A	MKHDIDLFCEPDLSYEFRYPVKLLNIVFQGGTFGNFLKFFVEKFSTKTPDMIGDPFTEIGTSHQVNDSNFSGLIERYHQRFINDNEGNSDLPVCLVIPSNKKHFLYLKKAQWFRAGDSKISPDDLWQKAIGEMPEMIAKQAHDIIKLYDIKETAHFTWIPKFIVRDWYKLEFLQDLEDTYNYQWFDTFKKHPFFEGQKVFHLDLETFFDLETFIENITELNDVFDLALDFDRLTEMKEIFNKGLSLDVIRQECNMVEDVLANRSDAQLNDLDVATEAFIYAEMEKDNTDIQAPLTNRFFRDATEISQFIEHYPNWYRRPNPNIKK
Ga0211686_100466363	F000302	AGGAG	MTAQTMALDTKEKIRDLEGQKILLEDRLEHLGYASNLVKMHETESEIFEIEDTIKKLIG