Scaffold Ga0211686_10005431

Overview

Basic Information

• Taxon OID: 3300020382
• Scaffold ID: Ga0211686_10005431
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000780 (ERX556058-ERR599059)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6140
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_084
• Coordinates
  • Lat. (^o): -60.3606
  • Long. (^o): -60.5096
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004990	Metagenome	416	Y
F008915	Metagenome / Metatranscriptome	326	Y
F015659	Metagenome	253	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211686_1000543111	F015659	GGA	MKLGNLQDAIKEFRDNIDDSDYANLGAKGKYLTVPYRIKFVRDFFGQRMSIQTESTELANGSHKFKANIYIDDRLVSVGESKQMKNGDKEFEKQQTVSIGRGLSILGFFGDELATAEEMEQFLKPPAKEIPKAAPIVKLVPKVKANIESLANDWIEVLKKTAETSNSLSNYEKNLNVMRKEYISDLHLIWSDLIQQARIDSEYLKQQKLITNRKI
Ga0211686_100054313	F004990	GGA	MYGDLKKPCCVCKKGADLNEKGKRYCADHYALHVLGKSMSQIDKELGVKK
Ga0211686_100054316	F008915	AGG	MFIGAKIKRVIMSDNITLDLYELHSASHLGILRCLESIKNKEKWGYNYKGSLNDQIAKSVSGAMGEVALAKFLGIKFEYHCNVGGIPDLIYKDLKVQCRTQLPKNNNSLIIRPKANCGELYALVIDEAPIFKILGFVNSTHVLGTEKFLTNFGLDRPACHSVPPEKLTPIFLLKNGTWN