Basic Information | |
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Taxon OID | 3300020381 Open in IMG/M |
Scaffold ID | Ga0211476_10042218 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_A100001011 (ERX291769-ERR318620) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1893 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
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Location Name | TARA_030 | |||||||
Coordinates | Lat. (o) | 33.93 | Long. (o) | 32.7322 | Alt. (m) | Depth (m) | 70 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F013482 | Metagenome / Metatranscriptome | 271 | Y |
F014276 | Metagenome / Metatranscriptome | 264 | Y |
F063771 | Metagenome | 129 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0211476_100422184 | F014276 | AGG | MIHKISDLCKKIDGLKIISDRLYNTKYNQPKTTSRDAEVNNMIEDIQATCKLIANDNKPYDK |
Ga0211476_100422185 | F013482 | N/A | MTNKDITIKNLKDRQKEINEEIEYKNTQSLSEELYEIEDTLKKLGVNESDTVNFN |
Ga0211476_100422187 | F063771 | AGGA | MPPYDPRAFIKLMFWSISFLLICTYLFGNENGDLSKEIYPVENVKVLEVLEKIEQLEKDGDKTYWNKITEVKPKDAADQYCYVKVIIKESDNQIIKEEILECADGRSRVDAPTYWQLFAE |
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