NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211476_10021332

Scaffold Ga0211476_10021332


Overview

Basic Information
Taxon OID3300020381 Open in IMG/M
Scaffold IDGa0211476_10021332 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_A100001011 (ERX291769-ERR318620)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2979
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_030
CoordinatesLat. (o)33.93Long. (o)32.7322Alt. (m)Depth (m)70
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007667Metagenome347Y
F051542Metagenome144Y
F066700Metagenome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0211476_100213322F051542AGGMKIILIISFIFLTNCSAKFDGFDPSTTALRWIITSEKDN
Ga0211476_100213323F066700GGAGMTPEYGFLMLGMGLVAILIGAIVAYLIINKVHNEDNTDN
Ga0211476_100213324F007667N/AMSWRKKEIQMVDELNEKVFSKDPLRVVSTAYYSLDVINSNYIKELKNREKYTPQDFDGSLIEKHKYDYLKRSCGDRIPGYICRFKDGSYWAWNLNKVEPEWYKKDLPTTTHFENTNFKSKTIGDLKLKDGVKLI

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