Scaffold Ga0211476_10021332

Overview

Basic Information

• Taxon OID: 3300020381
• Scaffold ID: Ga0211476_10021332
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_A100001011 (ERX291769-ERR318620)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2979
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_030
• Coordinates
  • Lat. (^o): 33.93
  • Long. (^o): 32.7322
  • Depth (m): 70

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007667	Metagenome	347	Y
F051542	Metagenome	144	Y
F066700	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211476_100213322	F051542	AGG	MKIILIISFIFLTNCSAKFDGFDPSTTALRWIITSEKDN
Ga0211476_100213323	F066700	GGAG	MTPEYGFLMLGMGLVAILIGAIVAYLIINKVHNEDNTDN
Ga0211476_100213324	F007667	N/A	MSWRKKEIQMVDELNEKVFSKDPLRVVSTAYYSLDVINSNYIKELKNREKYTPQDFDGSLIEKHKYDYLKRSCGDRIPGYICRFKDGSYWAWNLNKVEPEWYKKDLPTTTHFENTNFKSKTIGDLKLKDGVKLI