NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211498_10222299

Scaffold Ga0211498_10222299


Overview

Basic Information
Taxon OID3300020380 Open in IMG/M
Scaffold IDGa0211498_10222299 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B000000565 (ERX555945-ERR599058)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)714
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_057
CoordinatesLat. (o)-17.0283Long. (o)42.7449Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003091Metagenome / Metatranscriptome508Y
F014553Metagenome / Metatranscriptome262Y

Sequences

Protein IDFamilyRBSSequence
Ga0211498_102222992F014553AGGAGMSKKKSSNWEHYKTFTLKDGTKFLARDEKDAELYRKKVGE
Ga0211498_102222993F003091AGGAGMTLRPMKPITKPGEGKKRQKYVSNEQYLEERYQISAGLQGPERQEGESFEDYKTRRRVENGLLKEYLRGVWVKDDXSQITKSKNGY

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