Scaffold Ga0211498_10210834

Overview

Basic Information

• Taxon OID: 3300020380
• Scaffold ID: Ga0211498_10210834
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B000000565 (ERX555945-ERR599058)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 735
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Libanvirus → unclassified Libanvirus → Libanvirus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_057
• Coordinates
  • Lat. (^o): -17.0283
  • Long. (^o): 42.7449
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012583	Metagenome / Metatranscriptome	279	Y
F023620	Metagenome / Metatranscriptome	209	Y
F049045	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211498_102108342	F023620	GGAGG	MKTALFLSDYDLSTVHYLCSYYIDNANLDRQDVDYITELQNRVENLMEVSK
Ga0211498_102108343	F012583	AGGAGG	MRLSDQVKIKAFDKYIMRGGDQSLQNIEELCDFGFNMCQLGYDPETFNDVVIDVICKLTEKLEANS
Ga0211498_102108344	F049045	GGAGG	MTVRELVEKLLDFDGDEQVTFYYLKDNILTNCQFEDINSYGMGIEFTVQDTYDGIESTMF