Scaffold Ga0211498_10007994

Overview

Basic Information

• Taxon OID: 3300020380
• Scaffold ID: Ga0211498_10007994
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B000000565 (ERX555945-ERR599058)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3847
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (93.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_057
• Coordinates
  • Lat. (^o): -17.0283
  • Long. (^o): 42.7449
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001026	Metagenome / Metatranscriptome	802	Y
F004869	Metagenome / Metatranscriptome	420	Y
F007756	Metagenome / Metatranscriptome	345	Y
F009691	Metagenome / Metatranscriptome	314	Y
F043983	Metagenome / Metatranscriptome	155	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211498_100079941	F004869	GGAG	MSCNSEYYYALHTFLEDDELHNIWNIVEKAMNRHGFDVSNSELSMRLYDEELEENMEHDYMKDYFDSLSEGKDYGSKVDALVDSMGVTDEKVSPIHRRKDMDLL
Ga0211498_1000799412	F043983	AGGAG	MPLTQDELQTLIMLVDARLERQYNEEYQTILDKLTEYQWRTLK
Ga0211498_1000799415	F009691	AGGAGG	METELNSKDYVAFARRFVKELVEDMDIEELRSIVSQRIHEEIQEGENTYGQEGAFEEMKGWSEDIFNI
Ga0211498_100079944	F007756	GGAGG	MQTLKRYYINVKFEKYGTYTFEARSKEHAIQMYNDGDYGWSDYSEDFGEFNEVIEDVEEEVFADTQLSLEGVV
Ga0211498_100079949	F001026	GGAGG	MKHTIELDDMELTALMTHLEGQSEIMNESRLNSSDPHTPDREEVLLNLVYAKVFTLAYELDKDPNVDYDLMQNYNRIYDYKLYPQVYGQMP