Scaffold Ga0211498_10006625

Overview

Basic Information

• Taxon OID: 3300020380
• Scaffold ID: Ga0211498_10006625
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B000000565 (ERX555945-ERR599058)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4211
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_057
• Coordinates
  • Lat. (^o): -17.0283
  • Long. (^o): 42.7449
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018738	Metagenome / Metatranscriptome	233	Y
F019665	Metagenome / Metatranscriptome	228	Y
F024331	Metagenome / Metatranscriptome	206	Y
F033075	Metagenome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211498_1000662510	F033075	AGGAGG	MTNKSPMQKAYEHVLHSYNPLEIKDILLHGASRKATKHKSEDDILTFYANHNEGIHHDLLDSKFEYCREYLLCQAAYNRSDKDHECQYYFLRDVVWLYIDKVADELGDEYKLHNKPRKEIEDEVLAIDLEFRKRQLQVIDGGKS
Ga0211498_100066253	F018738	N/A	MTLYRYYCADTDCGKHFCLMASDDIEAAYRADSMAKEWYNTTLKDVYLDKHANPNRRYRPYDKEILSQQLQ
Ga0211498_100066255	F024331	GAG	MIDPYKYATIKPLYMLIKVDVDKEIVYNQDAAEKYAENHCNKLEYSLCDWYYPDDPQYPYIAK
Ga0211498_100066258	F019665	AGGAG	MGFNTYIDDKDMIPVLLAYDWIISKDTWTDCPYETYQSIKKRELHNGNAVEYLTFLKGEM