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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020380 Open in IMG/M |
| Scaffold ID | Ga0211498_10000281 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B000000565 (ERX555945-ERR599058) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | CEA Genoscope |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 17628 |
| Total Scaffold Genes | 28 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 18 (64.29%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | TARA_057 | |||||||
| Coordinates | Lat. (o) | -17.0283 | Long. (o) | 42.7449 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F023957 | Metagenome / Metatranscriptome | 208 | Y |
| F033111 | Metagenome / Metatranscriptome | 178 | N |
| F048576 | Metagenome / Metatranscriptome | 148 | N |
| F097450 | Metagenome / Metatranscriptome | 104 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0211498_1000028117 | F097450 | AGGAGG | MNKLYTQNQSKDKITSVDGFIINTVSCSNDNTDEPGVTIQLTGLESMWYNHEENVNHPEGSEYPVNINVPFMKLMRQRIVDSILHRTGIDIRTFDNVIHASISPGRNPDGSFMESPYEDKIIRNVA |
| Ga0211498_1000028122 | F023957 | AGGAG | VSNKTPYEIRLELIQEARLILQAKAGKPEFMPSTEEVISEAEKLNQFISKKPEHTR |
| Ga0211498_1000028123 | F033111 | GGAG | MTDRVDLPYYFEIPELSMPPFDVTEYFIDEKEREIAKTDVKTADRLTGESRSNTANWYQSFIKVEENSSQDKRDFKQVNLYEEANYNLTKNLKEWLQDTLNLKFSSVLMLRTPANANSRWHCEGPVFHTRQCALNFPVFGDFEKSEAQWATFPRFKNIDPRENEKHGFVTQTDMKETEMLCRWTNQTVPGFQNTMIMHRGYNEHCDTDRVILSAAVEDTADINVVYKKYIDGKLLK |
| Ga0211498_100002818 | F048576 | GAGG | MTVEAYIPKHKYIATTLQSSNIDIDLSNAKVLELWGNAGTLLKDPENEVAEENYTVFEYDLEAIEAGIEEFPNADFRRWNHHNQMNNPSGNIDEPMPFATNEKFDLIISYMKSANVDPEILENILKECYEHLNPGGTIMFGVFVREISLNYFVVRRTHEYGMLDEGLIETTETADHFCLINNDDIRPHIKRVPTEGDDGVLEATHYTWFWNADYMEEYLQETFPSANIGVRRLPPMWSIQSPYTIQKTS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |