Scaffold Ga0211652_10165847

Overview

Basic Information

• Taxon OID: 3300020379
• Scaffold ID: Ga0211652_10165847
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000902 (ERX556001-ERR599168)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 673
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_102
• Coordinates
  • Lat. (^o): -5.2476
  • Long. (^o): -85.3343
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020033	Metagenome / Metatranscriptome	226	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211652_101658471	F020033	GAG	MKNGSKRQPQFLQYRTYSHHDHDIDDLDGEFWPMMGILLAIWGVWTGAIHLIDWLTFDAVVWWVEPFTIAPVIFLIVMKEKFDSLNPLHWWPMFWGYQAKLPDEDRITIRPLDTERIM