Scaffold Ga0211652_10133077

Overview

Basic Information

• Taxon OID: 3300020379
• Scaffold ID: Ga0211652_10133077
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000902 (ERX556001-ERR599168)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 755
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium TMED8 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_102
• Coordinates
  • Lat. (^o): -5.2476
  • Long. (^o): -85.3343
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002507	Metagenome	553	Y
F040872	Metagenome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211652_101330773	F002507	N/A	MTYYLLLDGDTEKDVIYETNVLGEESFGVFYPAMGLGLLNKIIQDVEDDALLENIRILDDHKTQHSITEFLDKLDKWRIKKA
Ga0211652_101330774	F040872	N/A	LVNLSEILQESGEVGTMELEIFKFEIKSLKTYEKELILVK