Scaffold Ga0211652_10038710

Overview

Basic Information

• Taxon OID: 3300020379
• Scaffold ID: Ga0211652_10038710
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000902 (ERX556001-ERR599168)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1430
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_102
• Coordinates
  • Lat. (^o): -5.2476
  • Long. (^o): -85.3343
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005537	Metagenome / Metatranscriptome	397	Y
F008307	Metagenome / Metatranscriptome	335	Y
F043149	Metagenome / Metatranscriptome	157	N
F071633	Metagenome / Metatranscriptome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211652_100387101	F071633	N/A	SLKYEKIPFAYSLLPITCDEMFEKNVKYVENPNYKEGNGEVWVLTKYKNQNVVAHYCKDSEGNYVR
Ga0211652_100387102	F005537	AGG	MSDNVKFISEIERLLKQKQDDYGEFDHTSYVMSGILEKYLSVYNNVEVKVPLKLFGLFMIFLKCWRVMQSDNYKKDSFDDINGYAELLRRLVINEQEKR
Ga0211652_100387104	F008307	AGCAG	MVKVLKRSSLELAVDFEEIFDGASVEEATQKAHSQKMPSEFAKANITDNKLISANIKLIGEENDELKK
Ga0211652_100387105	F043149	AGGAG	MSLKNSNTRLYNKLDKAHKKVYAAKDKGRQCVHTLKAFKEYNQLFRRIVEAENKDARFLY