Scaffold Ga0211652_10016491

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211652_10016491

Scaffold Ga0211652_10016491

Overview

Basic Information
Taxon OID	3300020379 Open in IMG/M
Scaffold ID	Ga0211652_10016491 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000902 (ERX556001-ERR599168)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2216
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (88.89%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_102
Coordinates	Lat. (^o)	-5.2476	Long. (^o)	-85.3343	Alt. (m)		Depth (m)	40
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F028529	Metagenome / Metatranscriptome	191	N
F049702	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211652_100164913	F049702	GAGG	MTLIDFNKKELHDIYSALSYTRLEIGFENKTEEELYDRLTKIMDKVAKLRNVCNCQEGKK
Ga0211652_100164918	F028529	AGGAG	MRLSKFLTENLDKKTVSLTLTFDERSELLRHLENYDEHIDQLHPLVESVQDKLLGID

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