NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211652_10013555

Scaffold Ga0211652_10013555


Overview

Basic Information
Taxon OID3300020379 Open in IMG/M
Scaffold IDGa0211652_10013555 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000902 (ERX556001-ERR599168)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2448
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_102
CoordinatesLat. (o)-5.2476Long. (o)-85.3343Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012719Metagenome / Metatranscriptome278Y
F043347Metagenome156N

Sequences

Protein IDFamilyRBSSequence
Ga0211652_100135551F012719N/AIGVGANSLAIYPLGPLATLAGGLCWLAVSIMWREAALITTNAVLSTITIVGLVYTYFH
Ga0211652_100135555F043347AGGMAKFENDLDLNRAKREVSRVKKTFETRIGKDKSLMKIINTLEKNKRIECFIFSKSIAFRIGKSSVKTISGFSTGFKSSFTRSLLAKQIFFPITLPPATTNYSKSDKVFLAACYFLLNEFKRVKSESDKTEAVESEQVLKVQGDLKKLVKEYGSVRLVIGKETFDVDDFKQVPGRPKADMIFTKNGQPRVFVSHKKGNMPAAFQQYGGFAADLGIKDLDTSKRYKEVFKFLTDVNTTLKGLGVSKDSEGRYDLNDLRKGSNMARLIKDEMIAMTVMFGKNYSTGVIGLDNCSILIDGDIIFKPKRLNTFELQGSFHTSINPKLQKMKKPFRSVASDVYSPVMFIMKSEQQGLKQAGLTNARAVIWPNNKVSQTYTKQFDEMFRGVKSGNRNIIKNLQEEYKK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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