NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211652_10012280

Scaffold Ga0211652_10012280


Overview

Basic Information
Taxon OID3300020379 Open in IMG/M
Scaffold IDGa0211652_10012280 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000902 (ERX556001-ERR599168)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2577
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_102
CoordinatesLat. (o)-5.2476Long. (o)-85.3343Alt. (m)Depth (m)40
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007531Metagenome / Metatranscriptome349Y
F037814Metagenome / Metatranscriptome167N
F059337Metagenome134Y

Sequences

Protein IDFamilyRBSSequence
Ga0211652_100122801F037814AGGAGMEISLGISIFMLLVIIVSFGFALKEIKECQKIIKKMQRRSRKYMR
Ga0211652_100122803F007531AGGAGMQRIQRLILDFTKDTGLTERREMVHGTLYVRLHEEKECDHFHKVLRTFYKDQINNEGGVNMYAVGDEFAFDFVPEDREAPVFSDDDYSGKEGMMPDDIDKGIWSDFAEEEMFNNMPDEVDTLMNLEAESKRGK
Ga0211652_100122809F059337AGGAGMDIWLSDRQENEMRKDGWSIPKKPETGSVFFKDEEVGFIDNFVGLRIGDDKTEAIHYLVDNETRIGYALWNIPKTERMW
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