Scaffold Ga0211652_10009125

Overview

Basic Information

• Taxon OID: 3300020379
• Scaffold ID: Ga0211652_10009125
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000902 (ERX556001-ERR599168)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3004
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_102
• Coordinates
  • Lat. (^o): -5.2476
  • Long. (^o): -85.3343
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005813	Metagenome / Metatranscriptome	389	Y
F006217	Metagenome	378	Y
F018289	Metagenome	236	Y
F053978	Metagenome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211652_1000912512	F018289	N/A	MTQFTRSQLNELRKGMQSALDSITNGTHLSDITFDVGNCSYNGGEATFKVKVLLKGAKTREQIDLEFYAELHNLDLTKTAKLMGEDMQLSGYKSRARKKPYVLKRLRDGAEFVADQNLIEKFYKKEETNA
Ga0211652_100091253	F006217	GGA	MIEILLAMVEEQNPIHKYCMDKHEHWTGRAACVQELRHAQRKMEVEELRQFLKDNPHYKYPGMALPNGRIKPLDVCWGSDKTYYIGSDKVKRSKC
Ga0211652_100091254	F005813	GAGG	MKLYKNSNGVWAGTQADARKYCGKDYSTVDVPTDKPNLLGFLNLNQVGSLASSPTLEEVRTGEPTKEAMSWFRWAHDCMLRGQYEDAKEMLRKGLIDDRDTTSDG
Ga0211652_100091257	F053978	GAGG	MQINDTTKQIIREIVVELFKEVASKQTFGNSDEVIQLDEHLHDWTGRKIDNYKVKVYGARLEEKY