Scaffold Ga0211652_10002733

Overview

Basic Information

• Taxon OID: 3300020379
• Scaffold ID: Ga0211652_10002733
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000902 (ERX556001-ERR599168)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5581
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_102
• Coordinates
  • Lat. (^o): -5.2476
  • Long. (^o): -85.3343
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031652	Metagenome	182	N
F037809	Metagenome	167	Y
F063601	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211652_100027331	F031652	AGTAGG	VQSLKIYVWGTQYFIDTYAGGLQSDCDKYGYALTIGVVPDADNFSHINHHIHRAMVDTVNNAEPGDRILFLDPECRIVKPIPEEWIQDTRPILCYKIADGKLDINRYEYGHTLPGPIQMQPIFLTAQDSGWIQWWYDASMAASDPERAVYVPHELFLELALKFNNIDIHTEYCVYNREWSQPQRIVKGSFVTADTIITHPDIHALLDPHVKHSVQDMKDSPFLDRRKLHNHFNNLDHIKQIDELMYKEQHDITKWPEGTTQEGNWYCI
Ga0211652_1000273311	F037809	AGGA	MKKLLSILALTMIVACSTPASANDVADDGKCLDDIKHFNHLWKTTSADQSTKDAAKAKRDEGSNHWATGDKEKCETAYQAAWALID
Ga0211652_100027337	F063601	GGA	MKTIILIILFFTVPGVIMGLVSSYRAGQKPIGDLYLRIKKFAQQKIKG