NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0211652_10002733

Scaffold Ga0211652_10002733


Overview

Basic Information
Taxon OID3300020379 Open in IMG/M
Scaffold IDGa0211652_10002733 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000902 (ERX556001-ERR599168)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5581
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (58.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_102
CoordinatesLat. (o)-5.2476Long. (o)-85.3343Alt. (m)Depth (m)40
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031652Metagenome182N
F037809Metagenome167Y
F063601Metagenome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0211652_100027331F031652AGTAGGVQSLKIYVWGTQYFIDTYAGGLQSDCDKYGYALTIGVVPDADNFSHINHHIHRAMVDTVNNAEPGDRILFLDPECRIVKPIPEEWIQDTRPILCYKIADGKLDINRYEYGHTLPGPIQMQPIFLTAQDSGWIQWWYDASMAASDPERAVYVPHELFLELALKFNNIDIHTEYCVYNREWSQPQRIVKGSFVTADTIITHPDIHALLDPHVKHSVQDMKDSPFLDRRKLHNHFNNLDHIKQIDELMYKEQHDITKWPEGTTQEGNWYCI
Ga0211652_1000273311F037809AGGAMKKLLSILALTMIVACSTPASANDVADDGKCLDDIKHFNHLWKTTSADQSTKDAAKAKRDEGSNHWATGDKEKCETAYQAAWALID
Ga0211652_100027337F063601GGAMKTIILIILFFTVPGVIMGLVSSYRAGQKPIGDLYLRIKKFAQQKIKG

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.