Scaffold Ga0211652_10002263

Overview

Basic Information

• Taxon OID: 3300020379
• Scaffold ID: Ga0211652_10002263
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000902 (ERX556001-ERR599168)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6119
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_102
• Coordinates
  • Lat. (^o): -5.2476
  • Long. (^o): -85.3343
  • Depth (m): 40

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013153	Metagenome	274	Y
F066241	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211652_1000226310	F013153	GAGG	MKITLKPWDVGIWLLLLFIGCDDRIEEPNKANVIVTVLRVDRIEIRDNLWITPAPIWGHLESEDAPVDRLIVHWWSNMYWNEDDSSGHYRLLPNRRNKAIYYDNFGNRDTVDINVDTLRWTTDEYSTVDSLGYFYNTLTPVRVMQSKGSGSWMKLYWSIEGTVIDSQTIFLMD
Ga0211652_100022638	F066241	GAGG	MANHVWQRVTINSSKPELHQTLEKWWGALAYDDVKGVVEPVFGKDFKYSTNVVGSKWVVIEDCDFGEDETYINFCSAWSPAIGFLEELNSAIQFIDEDACMSFVGDEESDDFWFAGYGSKNGFHWEEDADGPERPFEEDCEENGTDYDELIDEFYDEVNDLQSTLLSECIMVVDIEK