Scaffold Ga0211527_10189150

Overview

Basic Information

• Taxon OID: 3300020378
• Scaffold ID: Ga0211527_10189150
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000066 (ERX556006-ERR599102)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 577
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED197 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_038
• Coordinates
  • Lat. (^o): 19.0342
  • Long. (^o): 64.5162
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012041	Metagenome	284	Y
F047109	Metagenome	150	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211527_101891501	F012041	AGAAGG	MKKYRVSLEVDKEWVKNFDLTFDAVDEQDAEAQAMVEVKMNLGDYITAYADEEGDK
Ga0211527_101891502	F047109	AGGGGG	MKNYKVIGGYTVYEQYEINVQAKDSKDAIKKAEKIPVEKWDELQNSNDDSGFVIDDVWEDEE