Scaffold Ga0211527_10113010

Overview

Basic Information

• Taxon OID: 3300020378
• Scaffold ID: Ga0211527_10113010
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000066 (ERX556006-ERR599102)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 789
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_038
• Coordinates
  • Lat. (^o): 19.0342
  • Long. (^o): 64.5162
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012779	Metagenome / Metatranscriptome	277	Y
F054895	Metagenome / Metatranscriptome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211527_101130101	F054895	AGGAG	MADISLTNNTIYAQNINNFSGELFKVGGQRTPLLSAVGGLNGGKVLNSTYWQVQVED
Ga0211527_101130102	F012779	AGGA	MTEEQNNSDTGDKNWKEMREKLELYEGKIAEYEAKERSTVFNQAGLDTSKGVGKAVEMMFEGELTVDNIRQYATEEFGVDFGQEGGLQDTVQEAEKSQERLNNIQNNSVVDLYNTDVVSQVREIEKSGNVRNSIAAKLSVIEEAKKNSK