Scaffold Ga0211527_10072729

Overview

Basic Information

• Taxon OID: 3300020378
• Scaffold ID: Ga0211527_10072729
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000066 (ERX556006-ERR599102)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1034
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_038
• Coordinates
  • Lat. (^o): 19.0342
  • Long. (^o): 64.5162
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013945	Metagenome	267	Y
F051461	Metagenome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211527_100727291	F051461	N/A	NWQKSGPIDYGLEKLTLNFLTYRHNMENHNAQIFEPGHMETPEQYNAIAKKFSDVYLDWSFEKNMIYDLSTDRYVAY
Ga0211527_100727292	F013945	N/A	MLHLSTKEVVLSIEKAELEIKHGIIYQKYPNFFGNTFDFDFGKKENFEKLENQTNLNRLKLSKDDEVMKKLTVFFMNSSITQALEKKFRTDLKFDSVDVWIDSKGYKLPPHLDDKRIKLHLQVYLSNNNEGTSLYNPQGDLLYTFPFKVNYGYALYNGAYSYHGVEEVEEDGRTSLYVRY