Scaffold Ga0211527_10038760

Overview

Basic Information

• Taxon OID: 3300020378
• Scaffold ID: Ga0211527_10038760
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000066 (ERX556006-ERR599102)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1536
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_038
• Coordinates
  • Lat. (^o): 19.0342
  • Long. (^o): 64.5162
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021526	Metagenome	218	Y
F026851	Metagenome	196	Y
F091966	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211527_100387602	F026851	GGAG	MTPKEAQRFTKLLHNTDDMTPLEKAEVGRLKTAYLSAVIQETEAYVAAKEAYEDAKKHLDVTDPGEREVLMTLLKSMRDGEKNVLIIASELETHFGISA
Ga0211527_100387603	F091966	AGGAG	MTHTKQQIIAILENPAAVDAAIIILANNQTAGELRSKSTHNLNGEGFSAAYGKVGTRFYEFVTGIQMSSGTKKWPARSLSHPKAQQVFRRYVGHKHATVMDYARHIASLHWKQLGELFNMNFDVPAPQSLDVEPKVDKNRFVQFSCQLVRQSSKAFLVDIGGTEHWMPRSKCAISGNTLSIPQWLAEAKGLEV
Ga0211527_100387604	F021526	N/A	TKPEKIGDRWNYILITYSGFGSKNDPSYNLTKHFASKEAEEQGWAGPVLPQIFQFLRDQGVTHVYDSELSYDYEGGNENDFEGLFTLDRWIEIISMNL