Scaffold Ga0211527_10015791

Overview

Basic Information

• Taxon OID: 3300020378
• Scaffold ID: Ga0211527_10015791
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000066 (ERX556006-ERR599102)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2689
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_038
• Coordinates
  • Lat. (^o): 19.0342
  • Long. (^o): 64.5162
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046318	Metagenome	151	Y
F087055	Metagenome	110	Y
F097142	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211527_100157914	F046318	AGGA	MEYKQRFKDMPIDKAWIDSNKRELFIKEISNLAYGENTIERGYTMADVIEVLKEHSDNALKWEEGEE
Ga0211527_100157915	F097142	N/A	MNESNLRLSNVQQKAIRALAKADARPVKQMLSMVLNEGFNWVFNDFQENMQPYQGWPSDWEKIKKELENEYKKAMDIKEKDDHFDYIGEEY
Ga0211527_100157918	F087055	N/A	MKTTTEKEILKMNHTLTVSNAYGRDFKSKREILEHYNSNKDFQNLNVLTSGAIVNKQDAKRFKVNFLRVRYKNLMNIAMIDVLRDKFI