NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211527_10012059

Scaffold Ga0211527_10012059


Overview

Basic Information
Taxon OID3300020378 Open in IMG/M
Scaffold IDGa0211527_10012059 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000066 (ERX556006-ERR599102)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3202
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location NameTARA_038
CoordinatesLat. (o)19.0342Long. (o)64.5162Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004988Metagenome / Metatranscriptome416Y
F030928Metagenome184Y
F083388Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0211527_100120595F030928GGAGMKEWLKKLEAYTSFSILGFTIFICLIVIVVNCKYIIKLENTIDTMWHEIEQVKETNISLYQFIEEHKNDFD
Ga0211527_100120596F083388AGGAMVGMLMQKRISNIEWVITRCNPEFKKVWERKLEQLINRRVEMAYERMVEKARSVH
Ga0211527_100120597F004988N/AMVKLVETICPRCNGNGYIVVLDKDAFSKEIDCPMCEEEFMHMGGKVTTHNGYVMLPIEQTRRNVEGGRESIIKWSGETLPEKGQ

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