Scaffold Ga0211527_10008490

Overview

Basic Information

• Taxon OID: 3300020378
• Scaffold ID: Ga0211527_10008490
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000066 (ERX556006-ERR599102)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4013
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_038
• Coordinates
  • Lat. (^o): 19.0342
  • Long. (^o): 64.5162
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022909	Metagenome / Metatranscriptome	212	Y
F094410	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211527_100084903	F022909	GGA	MDDITDKEILRTFFDGKIGCIEYSDKWLPQLEQFCSIAKDCGYENNSSPEAMKVDEIQYHCMVHIPTNEIYAVAGVQYMPEYKEGYYRIWTRLCRIPKNDIPMTRATRYGRGEMPEFDGLLYFNCEWATRQENFKATFGTTLANKAYADNYVRSSNTITDYVKRNWWLKKGIAEPEGITEFYTVPQVVWRMYFDKFKELGK
Ga0211527_100084906	F094410	N/A	NDLSKRENDCTIAYCEARGIRYELFPIDVPALFDGDEFEYYGEKFPTTQPQMTIAGKFFDLLPDCCIVYPGFMMHVSNSDWTRTKNNGFMPFVPHQTQEHAAEVSGKEYTNFQEHYVDMYTSWMFTKSYGEVLKSPTQSFVDNAPHRYYQYEMRTIKQAGFDIKPTTQKLIGIELLKSHFGHDKYDNTLRQRLAPFGPLTLKYASLQYTVKVDTRLKEMLEKHHETNFDFINKLF