Scaffold Ga0211647_10087640

Overview

Basic Information

• Taxon OID: 3300020377
• Scaffold ID: Ga0211647_10087640
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000927 (ERX556007-ERR599065)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1084
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_109
• Coordinates
  • Lat. (^o): 2.0663
  • Long. (^o): -84.5304
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010848	Metagenome / Metatranscriptome	298	Y
F047067	Metagenome / Metatranscriptome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211647_100876401	F047067	AGGAG	MAQTKGEGKGVAEFATGTLISRHNLLAVLVDTGADLRTEDDAPFEAVERALGIIQPLMYEITDDNSGKIHCIVDGSQFDASAVQAQLQAIGTQEANSYSFASATVTLGTDMVIS
Ga0211647_100876402	F010848	AGGAG	MAQSDRRAAAAGEFIGKDVFLKSFQQQAGNISASQLTALVSSVQSLNLTVLKVGDFTAGSQDTVNFILEGADNLANGDLAGHVIGDVSF