Scaffold Ga0211647_10027661

Overview

Basic Information

• Taxon OID: 3300020377
• Scaffold ID: Ga0211647_10027661
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000927 (ERX556007-ERR599065)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2213
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_109
• Coordinates
  • Lat. (^o): 2.0663
  • Long. (^o): -84.5304
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006217	Metagenome	378	Y
F029123	Metagenome	189	Y
F037208	Metagenome	168	Y
F087042	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211647_100276611	F029123	AGGA	MSYEVWFGQNGNWFGYHSFKHRMDAVRYELRYLKMFPKLTVEIRRREHAS
Ga0211647_100276612	F006217	GGAG	MLELLLAMVEDTNQIQKYCMSKHDHWTGRAACVQELRQTQRKMEVERLRQFLKENPHYRYPGMALPNGKIKPLDVCWGSSRTYGTNKERIC
Ga0211647_100276616	F087042	GAGG	MNIEQICIASFKSMFDERLADGVILTPTYISMLVKEHCEPYMIVTQGFTHDLLANALDHMDWEYMSRHIMEDKNVT
Ga0211647_100276618	F037208	AGGAG	MFVILATKPLNDGTDGFRFNILGNKGIYRKRKIEKRYGKSQGDVMTGYHFGRRSLYITQAAPKRRLYHFAG