Scaffold Ga0211647_10022769

Overview

Basic Information

• Taxon OID: 3300020377
• Scaffold ID: Ga0211647_10022769
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000927 (ERX556007-ERR599065)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2494
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_109
• Coordinates
  • Lat. (^o): 2.0663
  • Long. (^o): -84.5304
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037769	Metagenome	167	N
F073646	Metagenome	120	Y
F088913	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211647_100227691	F073646	N/A	NEEEKVMLQSEYLELAIELYDIYSDSNIHHKKWLTVKELEKCKRGPGFVSRVKRMKGKMSELHPVFVDFVNTQRQYRSCNTPQQWSCKFDKWLQDEYEFNKEELDELQADRGRQI
Ga0211647_100227692	F037769	AGAAG	MSYRQTEGDKSDEKLLRRLLSEKMPEKDAKKIINHVFSDLIKWTYEDAVFHLTQIFNFTDEESDQLIKEYDILSSTTKEVIMNPPPSFEATAPRDVNDYKANLWQARKLLVEAKKLISATALTPRDYNNSTDFEEAIVQRMELQSNFVNINKYIDDHLTFAKNYTPPGK
Ga0211647_100227697	F088913	N/A	MASNYQPKYKVNDRVRIRYVLKTSNRYVMLNGKAVPTKIRKGIIKEVVAKENSCGAKVPHYQVLWDHQSRPSLISQHRIELESP