Scaffold Ga0211647_10019213

Overview

Basic Information

• Taxon OID: 3300020377
• Scaffold ID: Ga0211647_10019213
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000927 (ERX556007-ERR599065)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2766
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_109
• Coordinates
  • Lat. (^o): 2.0663
  • Long. (^o): -84.5304
  • Depth (m): 30

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021557	Metagenome	218	N
F054939	Metagenome	139	Y
F064806	Metagenome / Metatranscriptome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211647_100192134	F064806	GAG	MFKFIFGIIVGFMIFKFDWIDDMSNLINDYGVKEAIIEKLQEDVDIDNLENGGESEE
Ga0211647_100192135	F021557	GAGG	MRIILCVLLLTSNALACDYESNDEIQFKGSIESVRIIDKKVYPYVDDTRICTMHIESRIDGKWYSSKSKYIFGSEMSEDTACSLAENRAKVKVMREEIPETLTSKRNLSCDLTTDRNSCRIIYMNVEMPVVGTQRVKLKTCEE
Ga0211647_100192136	F054939	AGG	MSSYTFTFITLVCMYLAYSWGRYLTHKEIATEVANNTLNRLEREGFIKYIINKKTGEKEFKRFK