Scaffold Ga0211647_10003338

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211647_10003338

Scaffold Ga0211647_10003338

Overview

Basic Information
Taxon OID	3300020377 Open in IMG/M
Scaffold ID	Ga0211647_10003338 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000927 (ERX556007-ERR599065)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	7948
Total Scaffold Genes	20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	17 (85.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_109
Coordinates	Lat. (^o)	2.0663	Long. (^o)	-84.5304	Alt. (m)		Depth (m)	30
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F045723	Metagenome	152	Y
F105094	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211647_1000333814	F045723	AGGA	MNYCDMKGLIWPVLFCIFVIVVVPVLLVDNAKYCKQSIVPCYPWNDPE
Ga0211647_1000333819	F105094	GAGG	MKYAVMIMFDTDEDYNYVPEEWPCNTTEGYKPKLFDTFEAAEKERSKWNTGIIVDYSDDILRPMTQKERQRAKERELANTG

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