NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0211682_10154558

Scaffold Ga0211682_10154558


Overview

Basic Information
Taxon OID3300020376 Open in IMG/M
Scaffold IDGa0211682_10154558 Open in IMG/M
Source Dataset NameMarine microbial communities from Tara Oceans - TARA_B100000795 (ERX555997-ERR599121)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)905
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameTARA_085
CoordinatesLat. (o)-62.2658Long. (o)-49.1658Alt. (m)Depth (m)90
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017730Metagenome / Metatranscriptome239Y
F039831Metagenome / Metatranscriptome163Y

Sequences

Protein IDFamilyRBSSequence
Ga0211682_101545582F039831N/AMIRPVVGEGFLSACGPRGCSAVVCALEADDVVDIDEVTGFVGVEAYGGVGFIATIVEFFALIAFCKGE
Ga0211682_101545583F017730GAGGVTTEILHLDTRVTEDFINGIASSNGLTRSTGAHLFLNDLLMARRDPDGQIFAVRKGMNAEAEAMLR

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