Basic Information | |
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Taxon OID | 3300020376 Open in IMG/M |
Scaffold ID | Ga0211682_10023524 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100000795 (ERX555997-ERR599121) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2507 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
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Location Name | TARA_085 | |||||||
Coordinates | Lat. (o) | -62.2658 | Long. (o) | -49.1658 | Alt. (m) | Depth (m) | 90 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F015659 | Metagenome | 253 | Y |
F016879 | Metagenome | 244 | Y |
F020445 | Metagenome / Metatranscriptome | 224 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0211682_100235243 | F016879 | GGAG | MSVIKESFFEASFQTKEEFDNAELAAKSDVSDNADLTVTEIKLEKSVIKTNKDKEQTNEPEQHSKIVPEAK |
Ga0211682_100235246 | F020445 | AGGA | MSEQDKNFDNTAALWKRQPRDTDVAGKKYPHYQGNLTVGGKKMSLAAWLNVDKTKEGQPDISLKISEMMVKEEAPF |
Ga0211682_100235247 | F015659 | GGA | MKLGNLQDAIKEFRDNIDDSDYANLGAKGKYLTVPYRIKFVRDFFGQRMSIQTESTELANGSHKFKANIYIDDRLVSVGESKQMKNGDKEFEKQQTVSIGRGLSILGFFGDELATAEEMEQFLKPKAKEIPKAAPIVKLVPKVKANIESLANDWIEVLKKTAETSNSLSNYEKNLNVMRKEYISDLHLIWSDLIQQARIDSEYLKQQKLITNRKI |
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