Basic Information | |
---|---|
Taxon OID | 3300020376 Open in IMG/M |
Scaffold ID | Ga0211682_10010441 Open in IMG/M |
Source Dataset Name | Marine microbial communities from Tara Oceans - TARA_B100000795 (ERX555997-ERR599121) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 3863 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
---|---|
All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | TARA_085 | |||||||
Coordinates | Lat. (o) | -62.2658 | Long. (o) | -49.1658 | Alt. (m) | Depth (m) | 90 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F028321 | Metagenome / Metatranscriptome | 192 | Y |
F047315 | Metagenome / Metatranscriptome | 150 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0211682_100104411 | F028321 | AGGAGG | MLAEIAIANAIWKTLSTALKNGKQFYEMGSQVNEYLSATQKVKEKAGDSNSRGTPLEAFNYNETLNRQRSELEFHLKKSRLNGWSDFVKFEAEWHRERKEKEQDKINQRIKRNAKIQKDVELAINVGIVMLLALGLLFGVAVYYKGY |
Ga0211682_100104412 | F047315 | AGG | MSQMSDYDAGRLVTLVENLTKQVESLNTTSTILSQRVNNLEKQLVKGKGFLAGAMLLSLSLGGVGTTFLTKWLGT |
⦗Top⦘ |