Scaffold Ga0211682_10001330

Overview

Basic Information

• Taxon OID: 3300020376
• Scaffold ID: Ga0211682_10001330
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000795 (ERX555997-ERR599121)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13045
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_085
• Coordinates
  • Lat. (^o): -62.2658
  • Long. (^o): -49.1658
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054353	Metagenome	140	N
F068140	Metagenome	125	N
F096056	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211682_1000133016	F054353	GGA	MKAELDESSQVWTPMVIKITLETENEYLALRNIYSVQEVTSLNAEHRVRDRNVLTGLVNALVEAVGK
Ga0211682_1000133017	F096056	AGGAG	MKWHTIYECEGYTFKWWGDCIIDVFKPVKDARKKPAPAYTEIEIYEEADNQVVKIRCLDWLVEEGVIKSSGMYL
Ga0211682_1000133020	F068140	AGG	MNIKISNTNGAKNNKSYVRVYVNGDKVAEVSPSRRNPLGYLRTLKNSKHWGDMRVQLECCALAGMFTLKDVDNIMNEVKGVSSGS