Scaffold Ga0211682_10000393

Overview

Basic Information

• Taxon OID: 3300020376
• Scaffold ID: Ga0211682_10000393
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000795 (ERX555997-ERR599121)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28143
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (78.26%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location

• Location Name: TARA_085
• Coordinates
  • Lat. (^o): -62.2658
  • Long. (^o): -49.1658
  • Depth (m): 90

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043629	Metagenome	156	Y
F071649	Metagenome / Metatranscriptome	122	Y
F079229	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211682_1000039317	F071649	AGGA	MTNYTTDAQLDAQGLKHEEWLEDSMSAQRAMFNTARAKGVSIMAWKDTEFHDEHHYIVMAQNHKLEFVTWTWANGGFHNGHYYNDNEMQAWADYKERT
Ga0211682_100003933	F043629	GGA	MANSTINITIDVLNETVMLEIEVIWHMSVAGELTIDDFYGYHFDIKTGEYDRIPPWLHKIIETTYLLEEEYLDTIHLNCDENTY
Ga0211682_100003939	F079229	AGGA	MDILEKLDAVQYDFNFQHAITTNDADLLVASLSDHGVLITIAKANELIVNLKKVGASYDN