Scaffold Ga0211656_10010076

Overview

Basic Information

• Taxon OID: 3300020375
• Scaffold ID: Ga0211656_10010076
• Source Dataset Name: Marine microbial communities from Tara Oceans - TARA_B100000953 (ERX555974-ERR599132)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: CEA Genoscope
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3624
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location

• Location Name: TARA_102
• Coordinates
  • Lat. (^o): -5.2771
  • Long. (^o): -85.2995
  • Depth (m): 480

Associated Families

Family	Category	Number of Sequences	3D Structure?
F035723	Metagenome	171	Y
F096068	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211656_100100761	F096068	GGAG	MALLEDVVDFCKIELNIPQEVLVSVEVEDISEDNVKGWTTD
Ga0211656_100100763	F035723	AGGAG	MVNLVTNKAEETAHLRGQSRFYVAGWIANRECENPQEMPKECKGNIVVERWHEEYLTGYGDSVANGECLMNR