Scaffold Ga0211656_10005740

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0211656_10005740

Scaffold Ga0211656_10005740

Overview

Basic Information
Taxon OID	3300020375 Open in IMG/M
Scaffold ID	Ga0211656_10005740 Open in IMG/M
Source Dataset Name	Marine microbial communities from Tara Oceans - TARA_B100000953 (ERX555974-ERR599132)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5155
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Microbial Communities From Tara Oceans

Source Dataset Sampling Location
Location Name	TARA_102
Coordinates	Lat. (^o)	-5.2771	Long. (^o)	-85.2995	Alt. (m)		Depth (m)	480
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F068146	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0211656_100057404	F068146	AGGA	MKLDNSSYTVTPPDLYMTEHGISILISSINDDLVISIKELFEKLIATSIVFLVQSKKTNSGTLPWMWNNSRTCDFMVIDIDTCAWEDIMAGLLKSKDKQNTVLFFSDKYKRRETVKLINATGTNLVVRSIEDINNYIRLQMSPEYINEA

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